I got an error that is related to that one mentioned:
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ERROR 2012-09-02 18:40:54.184 [tsMuxeR-12] Fatal error in process initialization:
java.io.IOException: Cannot run program "tsMuxeR": error=2, Datei oder Verzeichnis nicht gefunden
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029) ~[na:1.7.0_06]
at net.pms.io.ProcessWrapperImpl.run(ProcessWrapperImpl.java:132) ~[pms.jar:na]
So in a terminal I added th directory <PMS Install Directory>/linux to the PATH variable and started PMS afterwards. The binary tsMuxer was found as expected.
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export PATH=/home/me/pms/linux:$PATH
cd /home/me/pms
./PMS.sh
I guess you could solve the the problem with not finding "linux/tsMuxer" by adding the parent directory of it to the PATH variable
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export PATH=/home/me/pms:$PATH
/home/me/pms/PMS.sh
The suggested solution of putting linux/tsMuxer in your home directory works as long as you have your home directory in the PATH variable.